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Journal:
Article Title: Sequence Divergence in the 3? Untranslated Regions of Human ?- and ?-Globin mRNAs Mediates a Difference in Their Stabilities and Contributes to Efficient ?-to-? Gene Developmental Switching
doi:
Figure Lengend Snippet: The hζ-globin mRNA 3′UTR contains a short poly(A) tail. (A) Measurement of poly(A) tail length (An) on transgenic globin mRNAs. Site-specific RNase H cleavage of globin mRNAs was targeted by an antisense DNA oligomer (horizontal bar) complementary to a sequence located approximately 100 nt 5′ to its poly(A) addition site. The RNA fragments were resolved on a denaturing acrylamide gel and electrotransferred to a nylon membrane. The 3′-terminal fragment, which contains the poly(A) tail, was visualized by hybridization with a site-specific 32P-labeled 3′UTR DNA probe, the position of which is indicated (∗□). The length of the fully deadenylated 3′-terminal RNA fragment was established by addition of excess oligo(dT) to the hybridization reaction prior to the RNase H digestion. (B) The hζ and α3′ζ mRNAs have shortened poly(A) tails. The poly(A) tail lengths of hα-, hζ-, and chimeric α3′ζ-globin mRNAs from transgenic reticulocytes were determined with the RNase H assay. The positions of the fully deadenylated 3′-terminal fragments are aligned, and the positions equivalent to a poly(A) tail length of 40 residues (determined by DNA size markers electrophoresed in parallel for each study) are indicated by an arrow. The results for each mRNA were confirmed in experiments with reticulocytes from mice representing two or more independent transgenic lines. (C) Densitometric analyses of the poly(A) tails from panel B. Signal intensities from hα-, hζ-, and chimeric α3′ζ-globin poly(A) tails from panel B were quantitated by scanning densitometry, and the adjusted scans were aligned to a standard scale to facilitate direct comparison.
Article Snippet: Internally 32 P-labeled antisense-oriented RNA probes for RNase protection assays were transcribed in vitro from
Techniques: Transgenic Assay, Sequencing, Acrylamide Gel Assay, Hybridization, Labeling, Rnase H Assay